Populus Trichocarpa Genome Browser
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Database
Ptrichocarpa_533_v4.0
Salicaceae
The entire species of this system
Program Selection
megablast
blastn
blastn-short
dc-megablast
rmablast
Database
Ptrichocarpa_533_v4.0
Salicaceae
The entire species of this system
Program Selection
blastp
blastp-short
Database
Ptrichocarpa_533_v4.0
Salicaceae
The entire species of this system
Program Selection
blastx
blastx-fast
Result
General Parameters
Max target sequences
default
10
50
100
500
1000
5000
Select the maximum number of aligned sequences to display
Expect threshold
Word size
default
16
20
24
28
32
48
64
128
256
Match/Mismatch Scores
default
1,-2
1,-3
1,-4
2,-3
4,-5
1,-1
Gapcost
linear
Existence:5,Extension:2
Existence:2,Extension:2
Existence:1,Extension:2
Existence:0,Extension:2
Existence:3,Extension:1
Existence:2,Extension:1
Existence:1,Extension:1
General Parameters
Max target sequences
default
10
50
100
500
1000
5000
Select the maximum number of aligned sequences to display
Expect threshold
Word size
default
2
3
6
Gapcost
default
Existence:9,Extension:1
Existence:10,Extension:1
Existence:11,Extension:1
Existence:12,Extension:1
Existence:13,Extension:1
Existence:6,Extension:2
Existence:7,Extension:2
Existence:8,Extension:2
Existence:9,Extension:2
Existence:10,Extension:2
Existence:11,Extension:2
General Parameters
Max target sequences
default
10
50
100
500
1000
5000
Select the maximum number of aligned sequences to display
Expect threshold
Word size
default
2
3
6
Gapcost
default
Existence:9,Extension:1
Existence:10,Extension:1
Existence:11,Extension:1
Existence:12,Extension:1
Existence:13,Extension:1
Existence:6,Extension:2
Existence:7,Extension:2
Existence:8,Extension:2
Existence:9,Extension:2
Existence:10,Extension:2
Existence:11,Extension:2